PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G198100.1
Common NameB456_005G198100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 435aa    MW: 48054.8 Da    PI: 8.7188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G198100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-0578100123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C+ C+k F r  nL+ H r H
  Gorai.005G198100.1  78 YICEVCHKGFQRDQNLQLHRRGH 100
                         89*******************88 PP

2zf-C2H213.30.00025154176123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H + +
  Gorai.005G198100.1 154 WKCDKCSKRYAVQSDWKAHAKIC 176
                         58*****************9987 PP

3zf-C2H211.10.0012184202523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg+ Fsrk+++++H   +
  Gorai.005G198100.1 184 DCGTIFSRKDSFVTHRAFC 202
                         8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-577100No hitNo description
Gene3DG3DSA:3.30.160.602.1E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03878100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74178100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355240119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-5149174No hitNo description
SMARTSM00355140154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSNFVQDFEE DEHHSTVISQ SSNESPNPIE HPITTSSKKK RNLPGNPGKH AFFFGKFSDP  60
DAEVVALSPR TLMATNRYIC EVCHKGFQRD QNLQLHRRGH NLPWKLKQRT NTEVKKRVYV  120
CPEPNCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHAKICGTRE  180
YRCDCGTIFS RKDSFVTHRA FCDALTEENY KVNRNHGAIG GSILQKQADE TMSISDHTKM  240
NLSIGNESMD NSQRLLSLKS TGIVNISSNL DQIFNPTTSL ASTLAIGSAY TSATALLQKA  300
AQMGAKISDN TIAPILLRGF TGYSTSNMNS SGSVQDGSNG AGTNGLYVGE ETSHNPLAPT  360
ALFDSHFLQA ENGKAANLLG QVYMEGGQKL TVDFLGMKPT GHQNVDNERN YDGNIMNLGY  420
SNAQEGLNNL RANW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5826931e-144JX582693.1 Gossypium hirsutum clone NBRI_GE15573 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479646.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A0D2NFT50.0A0A0D2NFT5_G
STRINGPOPTR_0001s12770.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1801789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]